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November 2011

Volume 32 Number 4

November 2011
ISSN: 1324-4272

Table of Contents

First Words

From omics to systems biology: towards a more complete description and understanding of biology

Author(s): Paul Chambers
Research Manager, The Australian Wine Research Institute
PO Box 197, Glen Osmond SA 5064
www.awri.com.au
paul.chambers@awri.com.au

In Focus

Metabolomic analysis of protozoan parasites

Author(s): Eleanor C Saunders1, David P De Souza2, James I MacRae1, Vladimir A Likic’3 & Malcolm J McConville1*
1 Department of Biochemistry and Molecular Biology, Bio21 Institute of Molecular Science and Biotechnology, University of Melbourne, 30 Flemington Road, Parkville, VIC 3010
2 Metabolomics Australia, Bio21 Institute of Molecular Science and Biotechnology, University of Melbourne, 30 Flemington Road, Parkville,
VIC 3010
3 Bio21 Institute of Molecular Science and Biotechnology, University of Melbourne, 30 Flemington Road, Parkville, VIC 3010

*Corresponding author
Tel 03 8344 2342 Fax 03 9348 1421 Email malcolmm@unimelb.edu.au

In Focus

From omics to systems biology: Exploring the mystery box of microbial life

Author(s): Martin Ostrowski, Sasha Tetu, Karl Hassan, Anahit Penesyan, Kent Lim, Liam Elbourne, Liping Li, Deepa Varkey & Ian Paulsen*
Department of Chemistry and Biomolecular Sciences
Macquarie University, Sydney, NSW 2109

In Focus

Systems biology: a new paradigm for industrial yeast strain development

Author(s): Cristian Varela1*, Simon A Schmidt1, Anthony R Borneman1, Jens O Krömer2, Alamgir Khan3, Paul J Chambers1 & The Australian Wine Yeast Systems Biology Consortium4
1 The Australian Wine Research Institute, PO Box 197, Glen Osmond, Adelaide, SA 5064
2 Australian Institute for Bioengineering and Nanotechnology (AIBN), University of Queensland, St Lucia, QLD 4072
3 Australian Proteome Analysis Facility (APAF), Macquarie University, Sydney, NSW 2109
4 Genomics Australia, Proteomics Australia, Metabolomics Australia, Australian Bioinformatics Facility and The Australian Wine Research Institute**
* Corresponding author: Cristian.Varela@awri.com.au

Under the Microscope

Functional genomics and mycotoxin discovery in the wheat glume blotch pathogen Stagonospora nodorum

Author(s): Peter S Solomon
Research School of Biology, The Australian National University, Canberra, ACT 0200
Email peter.solomon@anu.edu.au

Under the Microscope

Microbial communities in Antarctic lakes: Entirely new perspectives from metagenomics and metaproteomics

Author(s): Sheree Yau & Ricardo Cavicchioli
Address: School of Biotechnology and Biomolecular Sciences
The University of New South Wales, Sydney, NSW 2052
Telephone 02 9385 3516
Fax 02 9385 2742 Email r.cavicchioli@unsw.edu.au

Under the Microscope

Yeast as a system for systems biology

Author(s): Ian W Dawes, Johnny C-Y Lee, Abraham M-C. Tsoi, Geoffrey D Kornfeld & Anita Ayer
School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, NSW 2052

Under the Microscope

Quantification of microbial phenotypes using 13C-Fluxomics

Author(s): Jens O Krömer
Australian Institute for Bioengineering and Nanotechnology, University of Queensland
Bldg 75, Cnr College and Cooper rds, QLD 4072
Email j.kromer@uq.edu.au

Under the Microscope

Probing connectivity between transcriptional and post-transcriptional gene networks

Author(s): Sarah E Boyd2, Jonathan M Keith2, Ana Traven1 & Traude Beilharz1
1 Department of Biochemistry and Molecular Biology, Monash University, VIC 3800
Tel 03 9902 9183 Fax 03 9902 9500 Email traude.beilharz@monash.edu
2 Department of Mathematics, Monash University, Clayton, VIC 3800
Email sarah.boyd@monash.edu jonathan.keith@monash.edu ana.traven@monash.edu traude.beilharz@monash.edu

Under the Microscope

Microbial proteomics: how far have we come?

Author(s): Stuart J Cordwell1,2
1 School of Molecular Bioscience Building GO8, Maze Crescent, The University of Sydney, NSW 2006
2 Discipline of Pathology
School of Medical Sciences, The University of Sydney, NSW 2006
Tel 02 9351 6050 Email stuart.cordwell@sydney.edu.au

Under the Microscope

Comparative genomics in the wine bacterium Oenococcus oeni

Author(s): Anthony R Borneman & Eveline J Bartowsky
The Australian Wine Research Institute
PO Box 197, Glen Osmond, SA 5064, Australia
Tel (08) 8303 6600 Fax (08) 8303 6601 Email Eveline.Bartowsky@awri.com.au Web www.awri.com.au

ASM Affairs

Retirement of Associate Professor David Ellis from the Editorial Board

Author(s):

ASM Affairs

The global effort to tackle the increasing incidence of chikungunya infection

Author(s): Lara Herrero & Suresh Mahalingam
Institute for Glycomics, Griffith University, QLD 4222

ASM Affairs

ASM Tri-State Meeting, Alice Springs – 30-September- 1 October 2011

Author(s): Peter Traynor MASM
Scientific Program Convenor,
Tri-State 2011

ASM Affairs

Student Special Interest Group

Author(s):