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Microbiology Australia

The Australian Society for Microbiology Inc.
Unit 23, 20 Commercial Road
Melbourne VIC 3004
Tel (03) 9867 8699
Fax (03) 9867 8722
Email admin@theasm.com.au
www.theasm.com.au
ABN 24 065 463 274

For Microbiology Australia correspondence, see address below.

Editorial team
Prof Ian Macreadie, Mrs Jo Macreadie and Mrs Hayley Macreadie

Editorial Board
Dr Chris Burke (Chair)
Prof Mary Barton
Prof Peter Coloe
Dr Narelle Fegan
Dr Ruth Foxwell
Dr Geoff Hogg
Dr Ailsa Hocking
Dr Ipek Kurtböke
Dr Gary Lum
Dr John Merlino
Dr Wieland Meyer
Prof William Rawlinson
Dr Paul Selleck
Assoc Prof Lindsay Sly
Dr David Smith
Ms Helen Smith
Prof John Turnidge
Dr Paul Young

Subscription rates
Current subscription rates are available from the ASM Melbourne office.

EDITORIAL correspondence
Prof Ian Macreadie/Mrs Jo Macreadie
Tel 0402 564 308 (Ian)
Email ian.macreadie@gmail.com

Published four times a year by

a division of Cambridge Media

10 Walters Drive
Osborne Park WA 6017
www.cambridgemedia.com.au

Copy Editor Rachel Hoare

Graphic Designer Gordon McDade

Advertising enquiries to
Simon Henriques, Cambridge Publishing
Tel (08) 6314 5222
Fax (08) 6314 5299
Email Simonh@cambridgemedia.com.au

© 2011 The Australian Society for Microbiology Inc. All rights reserved. No part of this publication may be reproduced or copied in any form or by any means without the written permission of the Australian Society for Microbiology. Unsolicited material is welcomed by the Editor but no responsibility is taken for the return of copy or photographs unless special arrangements are made.

ISSN 1324-4272

The opinions expressed in articles, letters and advertisements in Microbiology Australia are not necessarily those of the Australian Society for Microbiology or the Editorial Board.



CORRECTION TO THE GOLDEN JUBILEE ISSUE

ASM apologises for listing an incorrect name for an ASM Honorary Life Member in the Golden Jubilee issue. 

The correct name is:

Mrs Suzanne Dixon
Unit 204/ 18 McHarg Road, Happy Valley SA 5159




ASM SUSTAINING MEMBERS

    • Abbott Diagnostics Division
    • Australian Genome Research Facility Ltd.
    • BD Diagnostics
    • Bio Rad Laboratories
    • BioMerieux Australia Pty Ltd
    • Blackaby Diagnostics
    • Diagnostic Solutions
    • Diagnostic Technology
    • Don Whitley Scientific Pty Ltd
    • Inverness Medical Innovations
    • Olympus Australia
    • Oxoid Australia Pty Ltd
    • Roche Diagnostics Australia
    • Siemens Health Care Diagnostics
    • Wyeth Australia


    NATIONAL COUNCIL EXECUTIVE

    President
    Prof John Turnidge

    Past President
    Prof Hatch Stokes

    Vice-President, Scientific Affairs
    Assoc Prof Liz Harry

    Vice-President, Corporate Affairs
    Dr Johnson Mak

    BRANCH DELEGATES

    ACT/NSW Ian Carter
    QLD
    Dr Glen Ulett
    SA Mr Chris Ossowicz
    TAS Dr Louise Roddam
    VIC Mr Brendon Mainey
    WA Mrs Erica Lambert
    NT (sub branch) Mr Kevin Freeman

    Chair, National Scientific Advisory Committee
    Assoc Prof Liz Harry

    Chair, National Examinations Board
    Prof Peter Timms

    Chair, National Qualifications Committee
    Ms Suellen Blackaby

    Convenor, Visiting Speakers Program
    Assoc Prof Liz Harry

    Editor, Microbiology Australia
    Prof Ian Macreadie/Mrs Jo Macreadie

    Registrar, National Examinations Board
    Prof Margaret Deighton

    Public Officer of the Society
    Dr Ruth Foxwell

    Membership Services
    Meg Lukies

    BRANCH SECRETARIES

    ACT/NSW Kerry Varettas
    Senior Hospital Scientist
    SEALS Microbiology
    St George Hospital
    Gray Street, Kogarah NSW 2217
    Tel (02) 9350 3325
    Fax (02) 9350 3349
    Email Kerry.Varettas@sesiahs.health.nsw.gov.au

    QLD Dr Patrick Blackall
    Animal Research Institute
    Locked Mail Bag 4
    Moorooka QLD 4105
    Tel (07) 3362 9498
    Email blackap@dpi.qld.gov.au

    SA Vacant

    TAS Ms Sarah Foster
    LGH, Cnr Franklin and Charles Streets
    Launceston TAS 7250
    Tel (03) 6348 7670
    Email sarah.foster@dhhs.tas.gov.au

    VIC Vacant

    WA Miss Nicola Barrett
    PathWest Microbiology and
    Infectious Diseases
    QE2 Medical Centre, SCGH
    Hospital Avenue, Nedlands WA 6009
    Tel (08) 9224 2444
    Email nicola.barrett@health.wa.gov.au

    NT (sub branch) Mr Paul Southwell
    Royal Darwin Hospital
    Microbiology
    TIWI NT 8100
    Tel (08) 8922 8004
    Email paul.southwell@nt.gov.au

    CONVENORS OF ASM STANDING COMMITTEES

    Biosafety
    Dr Paul Taylor
    Manager, Research Ethics
    Melbourne Research Office
    The University of Melbourne
    Tel (03) 8344 2047
    Fax (03) 9347 6739
    Email pmt@unimelb.edu.au

    Clinical Microbiology
    Dr Stephen Graves
    Director of Microbiology
    Hunter Area Pathology Service (HAPS)
    John Hunter Hosp, Newcastle NSW 2300
    Tel (02) 4921 4420
    Mobile 0407 506 380
    Fax (02) 4921 4440
    Email stephen.graves@hnehealth.nsw.gov.au

    Ethics Committee
    Emeritus Prof Nancy Millis
    University of Melbourne
    S
    chool of Microbiology, Parkville VIC 3052
    Tel (03) 9344 5707
    Email jmjohn@unimelb.edu.au

    National Scientific Advisory Committee
    Assoc Prof Liz Harry
    University of Technology Sydney
    Inst. for Biotech. of Infect. Diseases
    Broadway NSW 2007
    Tel (02) 9514 4173 Fax (02) 9514 4021
    Email liz.harry@uts.edu.au

    Publications/Editorial Board
    Dr Chris Burke
    Degree Coordinator
    National Centre for Marine Conservation and Resource Sustainability
    Australian Maritime College
    Locked Bag 1370
    Launceston TAS 7250
    Tel (03) 6324 3806
    Fax (03) 6324 3804
    Email C.Burke@utas.edu.au

    Research Trust Committee
    Assoc Prof Liz Harry
    Institute for the Biotechnology of Infectious Diseases
    University of Technology, Sydney
    PO Box 123
    Ultimo NSW 2007
    Tel (02) 9514 4173
    Fax (02) 9514 8349
    Email Elizabeth.Harry@uts.edu.au

    Workplace Standing Committee
    Adj Assoc Prof Silvano Palladino
    Executive Director
    Pathwest Laboratory Medicine WA
    Ground Floor J Block
    QEII Medical Centre
    Hospital Avenue, Nedlands WA 6009
    Tel (08) 9346 2555
    Fax (08) 9346 4807
    Email Silvano.palladino@helath.wa.gov.au

    CONVENORS OF ASM SPECIAL INTEREST GROUPS

    Division 1

    Antimicrobials
    Dr John Merlino
    Concord Repatriation General Hospital
    Microbiology and Infectious Diseases
    Hospital Road, Concord NSW 2173
    Tel (02) 9767 6658
    Email JMerlino@med.usyd.edu.au

    Mycobacteria
    Dr Janet Fyfe
    Mycobacterium Reference Laboratory
    Victorian Infectious Diseases
    Reference Laboratory, 10 Wreckyn Street
    North Melbourne VIC 3051
    Tel (03) 9342 2617 Fax (03) 9342 2666
    Email Janet.Fyfe@mh.org.au

    Mycology
    Assoc Prof. Wieland Meyer
    Westmead Hospital
    Molecular Mycology Research Laboratory
    CIDM, ICPMR,
    Level 3, Room 3114A
    Darcy Road, Westmead, NSW 2145
    Tel (02) 9845 6895
    Email w.meyer@usyd.edu.au

    Mycoplasmatales
    Dr Steven Djordjevic
    Elizabeth Macarthur Agricultural Institute
    Private Mail Bag 8, Camden NSW 2570
    Tel (02) 4640 6426
    Email steve.djordjevic@dpi.nsw.gov.au

    Ocular Microbiology
    Dr Carol Lakkis
    University of Melbourne
    Clinical Vision Research Aust
    Cnr Cardigan & Keppel St
    Carlton VIC 3053
    Tel (03) 9349 7420
    Fax (03) 9349 7498
    Email clakkis@vco.org.au

    Parasitology & Tropical Medicine
    Dr Andrew Butcher
    Senior Medical Scientist
    Adjunct Senior Lecturer
    University of South Australia
    Institute of Medical & Veterinary Science
    The Queen Elizabeth Hospital
    Department of Clinical Microbiology & Infectious Diseases
    28 Woodville Road, Woodville SA 5011
    Tel (08) 8222 6728
    Fax (08) 8222 6032
    Email andrew.butcher@imvs.sa.gov.au

    Public Health Microbiology
    Vacant – to be advised

    Clinical Serology & Molecular
    David Dickeson
    Serology Manager, Centre for Infectious Diseases & Microbiology Lab Services
    Level 3, ICPMR, Westmead Hospital
    Westmead NSW 2145
    Tel (02) 9845 6861 Fax (02) 9633 5314
    Email david.dickeson@swahs.health.nsw.gov.au

    Veterinary Microbiology
    Dr Glenn Browning
    The University of Melbourne
    Vet Preclinic Centre
    Gratton Street, Parkville VIC 3052
    Tel (03) 8344 7342
    Email glenfb@unimelb.edu.au

    Women’s & Children’s Microbiology
    Convenor
    Dr Suzanne Garland
    Royal Children’s Hospital
    Microbiology, 132 Grattan Street
    Melbourne VIC 3000
    Tel (03) 9344 2476
    Email Suzanne.garland@rwh.org.au

    Secretary
    Mr Andrew Lawrence
    Women’s & Children’s Hospital
    Microbiology & Infectious Diseases Dept
    72 King William Rd, Nth Adelaide SA 5006
    Tel (08) 8161 6376
    Fax (08) 8161 6051
    Email andrew.lawrence@cywhs.sa.gov.au

    Division 2

    Virology
    Vacant

    Division 3

    AquaSIG – Water Microbiology
    Mr Simon Rockliff
    ACT Health
    ACT Government Analytical Laboratories
    Micro Section, Locked Bag 5,
    Western Creek ACT 2611
    Tel (02) 6205 8701 Fax (02) 6205 8703
    Email simon.rockliff@act.gov.au

    Cosmetics & Pharmaceuticals
    Dr Paul Priscott
    AMS Laboratories Pty Ltd
    8 Rachael Close
    Silverwater NSW 2128
    Tel (02) 9704 2300
    Mobile 0414 772 096
    Fax (02) 9737 9425
    Email paul@amslabs.com.au

    Culture Media
    Mr Peter Traynor
    Thermo Fisher Scientific
    20 Dalgleish Street
    Thebarton SA 5031
    Tel 1800 331 163
    Email Peter.Traynor@thermofisher.com

    Education
    Dr Chris Burke
    Degree Coordinator
    National Centre for Marine Conservation and Resource Sustainability
    University of Tasmania, Locked Bag 1370
    Launceston TAS 7250
    Tel (03) 6324 3806
    Fax (03) 6324 3804
    Email C.Burke@utas.edu.au

    Food Microbiology
    Sofroni Eglezos
    Technical Manager
    EML Consulting Services Qld Pty Ltd
    1/148 Tennyson Memorial Avenue
    Tennyson QLD 4105
    Tel (07) 3848 3622 Fax (07) 3392 8495
    Mobile 0410 664 530
    Email sofroni@eml.com.au
    www.eml.com.au

    Laboratory Management
    Captain Dennis Mok, MASM
    Health Services – New South Wales
    Victoria Barracks
    Paddington NSW 2021
    Email: convenorsig@gmail.com

    Microbial Ecology
    Dr John Bowman
    University of Tasmania Antarctica CRC
    GPO Box 252-80, Hobart TAS 7001
    Tel (03) 6226 2776
    Email john.bowman@utas.edu.au

    Probiotic & Enteric Microbial Diversity SIG
    Dr James Chin
    University of Queensland
    PO Box 128, Glenfield NSW 2167
    Tel (02) 4640 6359
    Email jameschin2006@gmail.com

    Rapid Methods
    Vacant

    Students
    Convenor
    Si Ming Man
    PhD Candidate, School of Biotechnology & Biomolecular Sciences
    University of New South Wales
    Sydney NSW 2052
    Tel (02) 9385 3514
    Fax (02) 9385 1483
    Email s.man@student.unsw.edu.au

    Division 4

    Microbial Informatics
    A/Prof Michael Wise
    University of Western Australia
    Biochemistry M310
    35 Stirling Highway, Crawley WA 6009
    Tel 08 6488 4410
    Fax 08 6488 1148
    Email michael.wise@uwa.edu.au

    Molecular Microbiology
    Dr Peter Lewis
    School of Environmental & Life Sciences
    University of Newcastle
    Callaghan NSW 2308
    Tel (02) 4921 5701
    Fax (02) 4921 6923
    Email peter.lewis@newcastle.edu.au




    2012 MEETINGS

    2012 Annual Scientific Meeting and Exhibition

    1-4 July 2012
    Brisbane Convention and Exhibition Centre

    We look forward to seeing you in Brisbane in July 2012


    GUIDELINES FOR AUTHORS

    The Editors and the Editorial Board of Microbiology Australia have specified guidelines for prospective authors to follow when compiling an article they wish to submit to the journal.

    Terms of submission

    The editors accept submissions in the form of research findings, clinical papers, case studies, reports, review articles, letters and product appraisals. Each submission is evaluated on its timeliness, relevance, accuracy, clarity and applicability to the journal. Contributions in any language are welcomed for publication but must be accompanied by an English translation. When accepted for publication, they will be published in the same issue. Please note that the Microbiology Australia does not accept responsibility for errors and omissions which may occur when publishing non-English text.

    Accompanying each submission must be a letter signed by all authors and stating that the work has not previously been published and will not be published elsewhere. Once it is published, the article and its illustrations become the property of the journal, unless rights are reserved before publication.

    All work is sub-edited to journal style. The editors reserve the right to modify the style and length of any article submitted, so that it conforms to journal format. Major changes to an article will be referred to the author for approval prior to publication. The Editor will provide assistance to first time authors and may be contacted by email.

    Authorship

    All authors must make a substantial contribution to the manuscript and will be required to indicate their contribution. Participation solely in the acquisition of funding, the collection of data or supervision of such does not justify authorship. All participating authors must be acknowledged as such; proof of authorship may be requested by the editors. The first-named author is responsible for ensuring that any other authors have seen and approved the manuscript and are fully conversant with its contents. If the author wishes to reproduce copyrighted work, it is the responsibility of that author to obtain written permission from the copyright holder and to submit the original copy of that permission to the editor with the work as it is to be copied.

    Conflict of interest: It is the responsibility of the submitting author to disclose to the Editor any significant financial interests they may have in products mentioned in their manuscript. Conflicts of interest should also be disclosed within the manuscript before the References section.

    Ethics

    Investigations in human and animal subjects must conform to accepted ethical standards. Authors must certify that the research protocol was approved by a suitably constituted ethics committee of the institution within which the work was carried out and that it conforms to the Statement on Human Experimentation or the Statement on Animal Experimentation by the NH&MRC.

    Manuscript type

    Microbiology Australia has a very large and broad readership; it is now released to science writers for further communication to the public. Articles should be written in a style that is attractive to this general audience while keeping your peer group informed of the latest developments and their impact.

    In Focus articles

    In Focus articles are major, review-type articles on a theme chosen by the Editorial Board which should attract interest and understanding from those in all disciplines of microbiology. They are published in each issue of the journal, should be about 1500 words in length and include 2-3 graphics or colour pictures. We would like you to discuss your own work in the context of other important work undertaken in the same field. It is important to acknowledge other work, since it helps paint a broader picture of your subject.

    Under the Microscope articles and Laboratory reports

    These are short reports of between 500 and 1000 words dealing with a current aspect of the topic. The opening paragraph should include the major points being made. State your conclusions up front, then discuss how they were arrived at. Concentrate almost entirely on the significance of the work being reported, rather than reporting detailed results. Articles, which should include a graphic or colour photograph, may be solicited by the Editorial Board or offered by members of ASM.

    Preparation of manuscripts

    Manuscripts are to be no more than 1500 words and include an abstract of no more than 250 words. Use double spacing with Times Roman 12 font and margins 2.5cm. Title page to include title of manuscript, author’s names, qualifications and affiliations, corresponding author’s details including email address and contact phone number, total word count and up to five key words. Include title of work on the abstract page and first page of introduction. Include key points on what is already known on the topic and what your manuscript contributes. Define abbreviations in the summary and on first mention in the text. Avoid abbreviations unless terms are used repeatedly and abbreviating them will enhance clarity. Additionally, photograph(s) of the author(s) must be included in the submission and should be in .jpeg format.

    Tables and figures are to be presented on separate pages, one per page. Tables should be clearly typed, showing columns and lines. Number tables consecutively using Arabic numerals in the order of their first citation in the text and supply a brief title for each. Place explanatory matter in footnotes, not in the heading. Explain in footnotes all non-standard abbreviations used in each table.

    Figures must be submitted on separate pages. Photographs of the highest quality may be included in the submission and should be in .jpeg format. Legends for any figures supplied must be typed in sequence on a separate page(s). Illustrations and figures must be clear, well-drawn and large enough to be legible when reproduced. Titles of illustrations should be supplied on a separate piece of paper, not in the figure or illustration. Each figure must include its place, its number, and the orientation of figure. Patients or other individual subjects should not be identifiable from photos unless they have given written permission for their identity to be disclosed; this must be supplied.

    Referencing guidelines

    The referencing format is based on the Vancouver style, the main feature of which is the use of numbers at the point of reference so as not to interfere with the flow of words. Each number corresponds to a single reference provided in the reference list at the end and, once assigned a number, a reference retains that number throughout the text, even if cited more than once. If more than one work is quoted in a reference, each work must be assigned a number. That is, at any point in the text, the reference may be one 1 or several 2-4 numbers.

    References are set out in the following style. Only include listings for up to two authors (for more than two, list the first followed by et al.) and cite both the first and last page numbers. For authors using citation managing tools, follow the style of Trends in Microbiology.

    1. Fisher-Hoch, S.P. et al. (1985) Pathophysiology of shock in a fulminating viral infection (Ebola). J. Infect. Dis. 152, 887-894.
    2. Groseth, A. et al. (2005) Hemorrhagic fever viruses as biological weapons. In Bioterrorism and Infectious Agents (Fong, I. and Alibek, K., eds), pp. 169-187, Plenum Press.

    Personal communications, unpublished observations and manuscripts in preparation should be square-bracketed and italicised in the text – for example: [personal communication].

    Submission of manuscripts

    Manuscripts are only accepted as an electronic submission with an attachment as a Word document. All tables, figures and photographs are to be included in the one attachment. Please ensure image files are no larger than 700kb. The manuscript must be accompanied by a covering letter indicating that the manuscript has not been submitted elsewhere and transferring copyright to the Journal.

    Manuscripts are submitted electronically:

    • Go to the publisher‘s website: www.cambridgemedia.com.au
    • Click on Manuscript System
    • Login
    • Create and account if first time using the system – this will be retained for future enquiries and submissions
    • Enter your personal details – Microbiology Australia requires all fields to be completed
    • Confirm your details

    Follow the steps for submitting an article

    • Step 1 – Type the title, type of paper and abstract. Microbiology Australia requires an abstract for all submissions. Select publication – Microbiology Australia.
    • Step 2 – Confirm author. Add co-author details (all fields) if applicable.
    • Step 3 – Upload files. Only Word documents are accepted by Microbiology Australia. Please ensure your document contains the required information and is formatted according to the author guidelines.
    • Step 4 – Add any comments for the editor.
    • Step 5 – Review your information then click submit.

    Once submitted, the manuscript is reviewed by the editor and, if acceptable, sent for peer review. You will be notified by email once your manuscript has been selected for peer review.

    Peer review process

    All manuscripts are initially reviewed by the Editorial Board and those deemed unsuitable (insufficient originality, serious scientific or methodological flaws, or a message that is too specialised or of limited interest to a general medical audience) are returned to the author(s), usually within 4 weeks. If the manuscript does not conform to the submission guidelines, the author will be asked to amend prior to peer review.

    All manuscripts are reviewed by content and writing peers for relevance, construction, flow, style and grammar. All reviewers spend considerable time in reviewing the manuscripts and providing feedback to the authors. The length of time of the publication process can vary and depends on the quality of the work submitted. Several revisions may be required to bring the manuscript to a standard acceptable for publication. The Editorial team undertake the final review and often have different questions for the author/s to consider.

    When time permits, proofs of articles about to be published will be sent to the corresponding author for review. This requires rapid response; if such a response is not forthcoming, the article will be published irrespective of the author’s reply. Providing facsimile numbers facilitates this process. The final decision about publication is made by the Editor.

    The peer review process is managed online. Decisions are communicated by email to the corresponding author. Authors without email are contacted by phone, fax or post. Submitted manuscripts are acknowledged by email.

    Publication deadlines

    All materials for publication must be in the hands of the Editor by the following dates for 2011.

    Please note that due to the editorial review process there is no guarantee of when accepted papers will be published.

    March 18: May 2011 issue
    July 15: September 2011 issue
    September 16: November 2011 issue